xlw1207 Goto Github PK
Name: Sky
Type: User
Bio: Grad Student in Dr. Christopher Vakoc's lab in CSHL
Location: CSHL
Sky's Projects
2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
2021-june-rna-seq-analysis
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
21_vakoc_pipeline
a
:sparkles: Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
all-modules-archive
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2018
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
bicg_2018
biocworkshops
Workshops for learning Bioconductor
bioinformatics_online
Resource list and preparation instructions for online learning and teaching for Bioinformatics
biomedicalresearch
EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).
cmm262-2021
The course repository for CMM262 for Winter 2021
cs228-notes
Course notes for CS228: Probabilistic Graphical Models.
csama
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
cshl-singlecell-2017
Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
cshl_2019
Course materials for CSHL 2019
cshladvseqtech2017
basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV
cut-runtools-2.0
CUT&RUN and CUT&Tag data processing and analysis
datasciencecoursera
datascienceresources
List of Books, Courses and other material for Data Science which I found useful
datasharing
The Leek group guide to data sharing
dge_workshop
dge_workshop_salmon
eba_2015_chip-seq
Training material. ChIP-Seq section. Aviesan Bioinformatic School
escape
Easy single cell analysis platform for enrichment
fungeno2019
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
in-depth-ngs-data-analysis-course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
intro-to-r
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