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  • šŸ‘‹ Hi, Iā€™m @XinmingTu, a second year PhD student at the Paul Allen School of Computer Science and Engineering at University of Washington supervised by Sara Mostafavi.
  • šŸ‘€ Iā€™m interested in computational genomics. Recently my research focused on regulatory genomics under the single-cell context, including sequence to function, multi-omics integration, perturbation modeling.
  • šŸ“« You can find more information on my homepage

XinmingTu's Projects

awesome-bio-ml-pku icon awesome-bio-ml-pku

This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking University.

awesome-single-cell icon awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

handbook icon handbook

This is a project aims to help Chinese student apply compbio PhD program

pertpy icon pertpy

Perturbation Analysis in the scverse ecosystem.

pomegranate icon pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

seurat icon seurat

R toolkit for single cell genomics

simple-scvi icon simple-scvi

Example repo of using scvi-tools building blocks externally with simplified scVI implementation

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