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antepiseeker

A C++ tool for detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm

antepiseeker2

Extended AntEpiSeeker algorithm relating epistasis detection to biological pathway analysis using ant colony optimization

aws-obesity-risk-prediction

comm_datasci_procedures

A toolkit for common data science procedures which can be applied to different domains such as marketing, fraud detection and e-commerce.

compute-grs

A small Perl script for computing genetic risk scores for obesity from a VCF file

emr-pyspark-life-styling-analysis

lung_cancer_risk

A full-stack deep learning solution for evaluating lung cancer risks

machine-learning-libsvm-lasso

A compile of Perl and R scripts for applying machine learning techniques including SVM and LASSO

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

mcscanx-transposed

Source code for my Bioinformatics paper "MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans".

ngs_pipeline_utilities

A python toolkit to facilitate development, regression testing and deployment of NGS pipelines

sas-biostat-tools

SAS scripts for various biostatistics applications. A complete pipeline for analyzing microarray data using linear models is included.

sklearn-bank-marketing

Build multiple machine learning models (Nearest Neighbors, SVMs, Decision Tree, Random Forest, Naive Bayes, etc.) for bank marketing data using sklearn and pandas.