Comments (3)
Write two methods get_ms_pos_mode_values()
and get_ms_neg_mode_values()
instead of the single get_ms_mode_value()
. When only one mode value is present in the MS mode column, propose another value '', 'NA', 'not_defined', 'unknown' or 'other'.
from lcmsmatching.
Abandon the "select" type. It is not usable into a workflow, since no file is available for reading. Use instead a "text" type with a default value (possibly read from the db file if available).
Do the same for all database fields.
from lcmsmatching.
Dynamic field has been removed.
from lcmsmatching.
Related Issues (20)
- speed up HTML writing
- NA values in M/Z column of input files give multiple matches with NA spectra HOT 1
- Local continuous integration HOT 1
- Remove useless methods HOT 1
- Implement needed methods into MsBioDb HOT 1
- Develop precursor match for biodb version HOT 2
- No more dynamic fields in XML HOT 1
- List chrom cols tool HOT 1
- Use text fields for in-house database column names HOT 1
- Conda dependency seemingly installed but failed to build job environment HOT 3
- Add r-biodb to bioconda recipes
- Make planemo tests pass HOT 1
- Update README HOT 1
- Integrate PeakForest compound information HOT 1
- Replace filedb example in help (XML) with extract from Massbank.
- Publish on toolshed HOT 1
- Remove spaces inside some of XML fields
- New tool for listing chrom cols
- Doesn't work with more recent versions of `biodb` HOT 7
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from lcmsmatching.