wolfemd Goto Github PK

academic-starter-book

Project Docs / Knowledge Base / Personal Notebook template for Academic Website Builder

academic-www

📖 Documentation site for Academic Website Builder

alphasimhlpr

Functions added to AlphaSimR to simplify simulating breeding schemes

alphasimhlpr_denovo

Functions to facilitate simulation of a breeding program using AlphaSimR, inspired / based on AlfSimHlpR by Jean-luc Jannink and Moshood Bakare.

breedingschemeopt

This workflowr project is for the NextGen Cassava Breeding Scheme Optimization.

cassavags_sops

The purpose of this document is as a manual, a teaching tool and a codebase to support genomic selection-related standard operating procedures (SOPs). This should serve to support the NextGen Cassava Breeding Project (http://www.nextgencassava.org) and its community of practice partnerships.

embrapa_2020gs

Conversion of DArTseqLD data and imputation of DArT report DCas20-5360 (EMBRAPA GS C2).

genomicmateselectr

Genomic Mate Selection

genomicselectionmanual

gsexample2022

GS Example Repository for 2022 workshop

hugo-academic

📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!

iita_2019gs

Genomic selection of IITA GS C4, July 2019

iita_2020gs

Refresh the IITA genomic predictions for all available germplasm with new field trial data.

iita_2021gs

iita_ea_2020

Imputed and processed IITA-EA cassava DArTseqLD report "DCas20_5261".

implementgmsincassava

marnin-wolfe

nacrri_2019gs

Genomic selection of NaCRRI GS C2, September 2019

nacrri_2020gs

Conversion of DArTseqLD data and imputation of DArT report DCas20-5419 for NaCRRI. Additional genomic prediction and selection to follow.

ngctrialqualitymetrics

Analysis to compute quality metrics on NGC trials from DB for presentation and NGC 2020 project meeting.

nrcri_2019gs

Genomic selection of NRCRI GS C2, July 2019

nrcri_2020gs

April 2020: Re-prediction for genomic selection of NRCRI GS C2. Includes prediction of total genetic merit. Includes nearly package-able functions. October 2020: Imputation DCas20_5440 + DCas20_5510 plus fresh genomic prediction including GS C3a.

nrcri_2021gs

This project documents informatics and genomic prediction to support the National Root Crop Research Institute 2021 cassava genomic selection breeding program.

predcrossvar

Complete set of functions for the prediction of additive and dominance genetic variances and co-variances among full-siblings, based on parents.

predictoutbredcrossvar

Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices

tari_2020gs

TARI 2020 GS: (1) Conversion of DArTseqLD data and imputation of DArT report DCas20-5629 (with GS C1). (2) Cross-validation and genomic prediction

wolfe_website

Academic blog and website. Come to learn about me, stay for the quantitative genetics.

wolfemd.github.io

workshops