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wnq13579's Projects

aldex2_dev icon aldex2_dev

ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test

ancom-bc-code-archive icon ancom-bc-code-archive

Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction"

ancombc icon ancombc

Differential abundance (DA) analysis for microbial absolute abundance data

bioawk icon bioawk

BWK awk modified for biological data

clinker icon clinker

Gene cluster comparison figure generator

fastspar icon fastspar

Rapid and scalable correlation estimation for compositional data

galaxy_blast icon galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

iqtree2 icon iqtree2

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

jgi-query icon jgi-query

A simple command-line tool to download data from the Joint Genome Institute's database

mafft icon mafft

Align multiple amino acid or nucleotide sequences.

nst icon nst

Normalized Stochasticity Ratio in community assembly

picrust2 icon picrust2

Code, unit tests, and tutorials for running PICRUSt2

q2-srs icon q2-srs

QIIME 2 plugin for microbiome count data normalization by scaling with ranked subsampling (SRS)

seqkit icon seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

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