Luzheng's Projects
An experimental open-source attempt to make GPT-4 fully autonomous.
Batch balanced KNN
Cell clustering for spatial transcriptomics data with graph neural network
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
🦄 Scientific journal and sci-fi themed color palettes for ggplot2
single-cell RNA-seq clustering
Gene Set Enrichment Analysis in Python
:exclamation: Go to the first (initial) commit of any GitHub repo
A python library for multi omics included bulk and single cell RNA-seq analysis.
Examples of single-cell genomic analysis accelerated with RAPIDS
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Single-cell analysis in Python. Scales to >1M cells.
Scanpy Tutorials.
scDIOR: Single cell data IO softwaRe
A package to help convert different single-cell data formats to each other
single cell Flux Estimation Analysis (scFEA) Try the below web server!
Deep probabilistic analysis of single-cell omics data
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Official implementation of the paper "Segment Everything Everywhere All at Once"
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Spatial Single Cell Analysis in Python
Tutorials for Squidpy
集成包