Comments (3)
This related to us wanting to remove the neuroimaging dependencies but havn't done so yet.
For now, if you install pybids, i.e. pip install pybids
this should go away. Let me know if it does not.
from teneto.
Thank you for the fast response. Unfortunately, I continue to get the same error, even after installing pybids.
I should also add that this only happens in JupyterLabs on GCP. It does not happen in Google Colab or on my local machine (all Python 3 environments), and for the latter two, I do not need to install pybids for teneto to work.
I was hoping to make teneto work on JupyterLabs as I need a high-RAM machine.
Is there anything else I could try? Many thanks.
from teneto.
You'll have to look up configuring sqlalchemy on GCP, as the issue is there.
However, if you are not using the neuroimaging functions, you can remove the importing of TenetoBIDS in the relevant places.
#74 Also please note that there is currently a big speed problem with teneto that I am trying to solve. This is about any function that uses the shortest paths especially (and will be even with high ram).
And fixing the importing structure to not import bids is on the todo list.
from teneto.
Related Issues (20)
- Remove dependencies on neural-specific modules but issue a warning if a function is trying to be used that requires it HOT 21
- [Question] shortest_temporal_path HOT 6
- MemoryError while loading graph HOT 14
- Control colormap of temporal graph nodes HOT 4
- Plotting slice_plot will fail if dataframe columns in wrong order HOT 4
- Improve shortest temporal paths (speed issues) HOT 1
- [ENH] Prewhiten prior to derive_temporalnetwork
- wrong number of nodes from TN.N and in netshape HOT 2
- Speed up the shortest path calculation speed HOT 1
- An error: The object 'TemporalNetwork' can't import dataframe data of weighted network HOT 3
- Label node on temporalnetwork ploting HOT 1
- Inconsistency when plotting slice plot a temporal network HOT 6
- How to make a community slice plot HOT 2
- Calculating consensus partition in teneto HOT 2
- Possible Typo in test_communitydetection.py
- Network Properties calculation speed problem HOT 3
- Deprecated call to scipy.temporal.distance.matching
- Minor wording error in what_is_tnt.rst HOT 1
- Deprecated function call in networkmeasures.volatility
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from teneto.