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alphafold

Open source code for AlphaFold.

awesome-diffusion-models

A collection of resources and papers on Diffusion Models

awesome-wasm

😎 Curated list of awesome things regarding WebAssembly (wasm) ecosystem.

benchmark_eval

A fork of the Benchmark Evaluation of Protein-Protein Interaction Prediction Algorithms paper's code. It has a good implementation of many of the machine learning PPI predicting papers.

bertviz

Tool for visualizing attention in the Transformer model (BERT, GPT-2, Albert, XLNet, RoBERTa, CTRL, etc.)

biowasm

WebAssembly modules for genomics

cbe30338

Chemical Process Control

clip

Contrastive Language-Image Pretraining

cookie-consent-monster

data-leakage-ppi-prediction

deep-rl-class

This repo contain the syllabus of the Hugging Face Deep Reinforcement Learning Class.

deepfe-ppi

deepfilternet

Noise supression using deep filtering

deepvhppi

Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

google-research

Google Research

llmsurvey

The official GitHub page for the survey paper "A Survey of Large Language Models".

machine-learning-collection

A resource for learning about ML, DL, PyTorch and TensorFlow. Feedback always appreciated :)

magika

Detect file content types with deep learning

mauricebrg.com-projects

This repository contains code that is referenced in some of the articles on mauricebrg.com.

monkey_caput

Custom PyTorch model (VGG-16 Auto-Encoder) and custom criterion (Local Aggregation) for image clustering. The repo contains elaborated creation of fungi image data using factory method.

ppi_gbert

ppi_gnn

pretraining-bert

Pre-train BERT from scratch, with HuggingFace. Accompanies the blog post: sidsite.com/posts/bert-from-scratch

primergpt

A tiny GPT model for generating primers, UMI and UDI adapters for Illumina sequencing.

proberta

provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

python-cheatsheet

Comprehensive Python Cheatsheet

python-guide

Python best practices guidebook, written for humans.

recreating_ml

A repository of machine learning from scratch implementations with explanations of how they are built and work.