Lu Zhang 's Projects
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
This pipeline has been deprecated as of August 2021. Please update your pipelines to the official nextflow pipeline.
Learning statistics and coding practice
Jupyter notebook based genomic data visualization toolkit.
A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
For something
坚持分享 GitHub 上高质量、有趣实用的开源技术教程、开发者工具、编程网站、技术资讯。
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
A collection of tools for Hi-C data analysis
HiTag: An optimized and flexible pipeline for Hi-Tag data processing
Code for the paper "Hi-Tag" published in "SCIENCE CHINA Life Sciences".
https://wbszhu.github.io/Hollow.GitHub.io/
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
STAR based ENCODE Long RNA-Seq processing pipeline
Jupyter notebook tutorials for MMSegmentation
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
Jupyter notebook and datasets from the pandas Q&A video series
A tutorial and implement of disease centered Medical knowledge graph and qa system based on it。知识图谱构建，自动问答，基于kg的自动问答。以疾病为中心的一定规模医药领域知识图谱，并以该知识图谱完成自动问答与分析服务。
Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series
scripts for RNA-seq
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent