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analysis-tools

Code for analyzing data saved by the Open Ephys GUI

aoc_2022

bash_scripts

binary_pulses

blip_figures

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

chimpy

CHIME recording analysis tools

daqface

A high-level python interface for a number of common NI DAQmx hardware tasks.

daskify

diffractsim

✨ A diffraction simulator for exploring and visualizing physical optics.

git-matlab-example

MATLAB exercise for np-crick Git meetup

gui-intro

Introduction examples for developing PyQt GUI applications

kilosort

Fast spike sorting with drift correction for up to a thousand channels

kilosort1

GPU code for spike sorting

labbox-ephys

neurolytics

Structures to hold and analyse electrophysiological data - work in progress

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

openai_tools

Just a drop of script to use ChatGPT API

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

phy

Modules for manual spike sorting GUIs, ephys data analysis, visualization

portfolio-website

post_kilosort

pulseboy

GUI tool for controlling NI pulse trains

pypulse

A set of tools for generating complex pulse trains for digital inputs, largely for use in driving high speed valves / PWM.

schedule-generator

A GUI tool for generating schedules - sequences of trials that run in AutonoMouse

slurmanage

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

support

Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.

tensortools

Fitting and visualizing tensor decompositions in Python

type_guesser