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alphafold4slurm

Open source code for AlphaFold.

bmlist

A List of Big Models

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

deeplearning-protein

A paper list of deep learning implementations in protein field

deeptmpred

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

dsspparser

DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom between the PDB id and dssp format, hssp format and sequence.

fapeloss

alphafold FAPE loss

gae-dgl

Reimplementation of Graph Autoencoder by Kipf & Welling with DGL.

infinibatch_pytorch

Efficient, check-pointed data loading for deep learning with massive data sets.

label-smoothing-pytorch

label smoothing PyTorch implementation

ncrnabert

ncRNABert: Deciphering the landscape of non-coding RNA using language model

ngl

WebGL protein viewer

omegafold

OmegaFold Release Code

openbabel

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

paper-reading

深度学习经典、新论文逐段精读

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

python-libraptorq

Python CFFI bindings for libRaptorQ (RaptorQ RFC6330 FEC implementation)

releasing-research-code

Tips for releasing research code in Machine Learning (with official NeurIPS 2020 recommendations)

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

tmalign

This repo is outdated. Please use https://github.com/pylelab/USalign instead

wangleiofficial

wangleiofficial.github.io

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