Daniel Wagenaar's Projects
A course organized by the Chen Institute for Neuroscience at Caltech on data analysis techniques in neuroscience
Electronic circuit design and PCB layout
Python code for reading ephys files
Viewer for gigapixel-size images
Visualization of gigavoxel volume with tracing functionality
Code related to the Perona-Anderson lab video capture tool
Interactive plotting tools for Octave
Code and data access for “Anatomy and activity patterns in a multifunctional motor neuron and its surrounding circuits”
Matlab/octave toolbox for the MBL Neural Systems and Behavior course
Data acquisition and analysis for multielectrode arrays
A simple Multivariate Granger Causality (MVGC) python tool rewritten from part of Matlab MVGC toolbox
Electronic Lab Notebook
The lab's collection of octave and matlab functions
Open-Ephys plugins made at at Caltech Neurotechnology Center
Collection manager for photographs with non-destructive editing
PiIPDisp displays the IP address of a Raspberry PI on an SSD1306 display.
Software for processing, recording, and visualizing multichannel electrophysiology data
Random collection of python libraries
qipdisp displays the computers IP address in a little window
QPlot is an alternative 2D plotting library for Python, Matlab, and Octave that facilitates beautiful typography and precise axis scaling
Suppression of Artifacts by Linear Polynomial Approximation
Alignment code for leech EM+VSD paper
Viewer for serial blockface electron microscopy data
Circuit diagram for a phototransistor "screenreader"
Barcode generator for synchronizing multiple recording devices
Very basic visual stimulus display
VScope is a package for acquisition and analysis of voltage-sensitive dye recordings along with electrophysiology.