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Vince's Projects

adam icon adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

aicspylibczi icon aicspylibczi

Python module utilizing libCZI for reading Zeiss CZI files.

annoy icon annoy

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

anormcypher icon anormcypher

Neo4j Scala library based on Anorm in the Play Framework

arrow icon arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

asv icon asv

Airspeed Velocity: A simple Python benchmarking tool with web-based reporting

atactk icon atactk

A toolkit for working with ATAC-seq data.

autoquiz icon autoquiz

Self-quizzing and representation of reading knowledge as questions and answers

avocado icon avocado

A Variant Caller, Distributed. Apache 2 licensed.

avogadro icon avogadro

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

awesome-deepbio icon awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-public-datasets icon awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!

basset icon basset

Convolutional neural network analysis for predicting DNA sequence activity.

bio4j icon bio4j

Bio4j abstract model and general entry point to the project

biopandas icon biopandas

Working with molecular structures in pandas DataFrames

bismark icon bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bisulfighter icon bisulfighter

a pipeline for accurate detection of methylated cytosine and differentially methylated regions

box icon box

Python dictionaries with recursive dot notation access

breeze icon breeze

Breeze is a numerical processing library for Scala.

bwa-meth icon bwa-meth

fast and accurate alignment of BS-Seq reads

cats icon cats

Lightweight, modular, and extensible library for functional programming.

ceftools icon ceftools

Tools for manipulating cell expression format (CEF) files

changepoint icon changepoint

A place for the development version of the changepoint package on CRAN.

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