volodymyrchapman Goto Github PK

anhir_mw

Compatibility and reproducibility fork of ANHIR_MW

automated-til-scoring-qupath-classifier-for-melanoma

QuPath TIL classifier for Melanoma on HE slides

automaticcolorunmixing_vc_branch

Clone of AutomaticColorUnmixing by Daan Geijs and RUMC ComputationalPathologyGroup

digital_pathology_tool_wiki

Collected links to useful digital pathology tools

dimred_cross_validation

Cross Validation evaluation of dimensionality reduction methods, as proposed in this Alex Williams blog: http://alexhwilliams.info/itsneuronalblog/2018/02/26/crossval/

encoding-genomic-sequences

Encoding genome sequences as chaos game representations (CGRs).

encoding-sequences-with-over-4-states

Methods of encoding text and messages using Chaos Game Representations

flutter_projects

A record of my journey from beginner to (hopefully!) wizard of Flutter app development

histoqc

HistoQC is an open-source quality control tool for digital pathology slides

hovernet_inference_pytorch

HoVer-Net inference code for simultaneous nuclear segmentation and classification (PyTorch version)

icaird

job_scraper

Scraping jobs into easy to filter dataframes

machine-learning-on-sequence-data

Using a variety of machine learning strategies to solve classification problem using DNA sequences

programming_assignments

Assignments completed for various online courses in Machine Learning and data science (in Python, MatLab, R or Kotlin)

quickannotator

An open-source digital pathology based rapid image annotation tool

quickannotator_infer

Infer on images using a trained QuickAnnotator model

single-cell-rnaseq-hackathon-2022

Winning entry to Single Cell RNAseq Hackathon 2022 (University of Leeds: https://conferences.leeds.ac.uk/bad-hackathon/)

splinedist

SplineDist: Automated Cell Segmentation with Spline Curves

thyroidclassification

uncommon-musical-scales

Making shareable and playable files containing every possible scale

wsi_level_inference

DL model agnostic WSI inference