Comments (3)
Hi @AndreaVolkamer,
Can anyone in your lab please take a look at this?
If tensorflow
is a source of problems again, I wonder if we could remove T021 and T022 from our global teachopencadd package environment.
Why?
We have had so many issues already with having tensorflow
as part of the installation and afaiu tensorflow
is not really the go-to ML/DL package anymore. So why not instead add an installation only for these two talktorials (maybe really with pinned versions).
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Hi @Q84-wq,
Could you please add some information on this issue: (a) your OS and (b) how you tried to install teachopencadd
?
I just tried on MacOS via
CONDA_SUBDIR=osx-64 mamba create -n teachopencadd teachopencadd
and was not able to reproduce the error you described. But that might just be because your setup was different.
Many thanks!
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Hello, miss Sydow,
I run my laptop on Windows 64-bit (Lenovo) and the app is Jupyter Notebook desktop. I tried again to install teachopencadd. Firstly I installed mamba into conda (I understand that it's not recommended, but it's more convenient for me) https://mamba.readthedocs.io/en/latest/installation/mamba-installation.html, then I used
mamba create -n teachopencadd teachopencadd -c conda-forge -c defaults
and there was written "warning libmamba Problem type not implement SOLVER_RULE_STRICT_REPO_PRIORITY" many times,
and then "Could not solve the environment specs
The following packages are incompatible" and there were biopython - > python, numpy; biotite - > python, h5py 2.10.0 - > python_abi 3.6(3.7).* *_cp36(37)m, mdanalysis - > python_abi; tensorflow 1.14.0, numpy - > python
The second way, mamba env create -f https://raw.githubusercontent.com/volkamerlab/TeachOpenCADD/master/devtools/test_env.yml
conda activate teachopencadd, it has stuck on Solving environment for a really long time
Thank you very much!
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Related Issues (20)
- T018: CI fail
- Strategy for data set handling in ML notebooks
- Env: Package ordering
- Conda packaging: env failure HOT 6
- 'no thumb nail' warning on website HOT 1
- Refer to nextAID in the new talktorials HOT 2
- T020: Problem with RMSD Calculation for Resname 03P
- teachopencadd.utils error not found HOT 2
- T008 - module 'Bio' has no attribute 'Alphabet HOT 5
- T019 ยท Molecular dynamics simulation - problems installing dependencies in Colab
- T010: Changed REST API
- T001: Pandas deprecation warnings HOT 1
- T011: Wikipedia scraping fails
- T024: Pandas/jinja import error HOT 1
- Broken docs links
- CI: `black` fails HOT 2
- CI: T006 output fail
- T008-T010: Cannot download PDB structure via MMTF API anymore HOT 6
- T008: Cannot download PDB structure via MMTF API anymore HOT 2
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