manage Panel : error with S4Vectors package about radiant

[kmezhoud]

Hi Vincent,
The problem comes when I attach IRanges package (http://bioconductor.org/packages/release/bioc/html/IRanges.html).
There is some dplyr functions that are masked.
How can I avoid this masks?
Thanks

Attaching package: ‘IRanges’
The following objects are masked from ‘package:dplyr’:
collapse, desc, slice
The following object is masked from ‘package:tidyr’:
expand
The following object is masked from ‘package:lubridate’:
%within%
The following object is masked from ‘package:psych’:
reflect

[kmezhoud]

I modified in radiant.R file
142 dplyr::slice(1:min(nshow,n)) %>%

It resolve the display of tables in manage and transform panels.
It remains the summary of transform panel...

[vnijs]

I have no idea what S4Vectors is and how you are are using it. It is not a part of Radiant at all so I have no idea what is going on. The only lead is that slice is a function in the dplyr package. Presumably you are trying to pass in an object that is not a list or a data.frame. Try transforming the object first.

[kmezhoud]

The object is Diamonds datasets...
Thanks

[vnijs]

Presumably you do something to that data with S4vectors before it goes to the transform or manage panel. Try to replicate the error in a simpler setting where you use your S4... function and then call one functions exported by Radiant (e.g., radiant::getdata).