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Vivek Bhardwaj's Projects

atom icon atom

:atom: The hackable text editor

cager icon cager

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/CAGEr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=CAGEr.

csaw icon csaw

Clone of the Bioconductor repository for the csaw package, see https://bioconductor.org/packages/devel/bioc/html/csaw.html for the official development version.

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

deseq2 icon deseq2

Differential gene expression analysis based on the negative binomial distribution

dm6_bsgenome icon dm6_bsgenome

A bsgenome object to use for drosophila (dm6), created from ensembl

doctorrbite icon doctorrbite

An updated R Markdown thesis template using the bookdown package, for University of Freiburg

ecosystem-packages icon ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

hicexplorer icon hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

icetea icon icetea

R/Bioconductor package for analysis of single and paired-end capped-RNAseq data (CAGE/RAMPAGE/MAPCap)

jekyll-now icon jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

learnr icon learnr

Collecting learning resources in R

loompy icon loompy

Python implementation of the Loom file format - http://loompy.org

methyldackel icon methyldackel

A (mostly) universal methylation extractor for BS-seq experiments.

mitoblacklist icon mitoblacklist

Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

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