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bigdataalgorithm

This course studies selected advanced programming and algorithmic techniques for handling large amounts of data. Topics that will be covered include Apache Spark (PySpark programming), graph algorithms, locality-sensitive hashing, data streaming, and machine learning.

cbioportal

cBioPortal for Cancer Genomics

cbioportal-frontend

React Frontend of cBioPortal :tada:

curation-platform

OncoKB Curation Platform

diseasenewsdiscovery

Disease News Discovery website is designed for visualizing data crawled from main media websites, such as BBC, CNN and Reuters. It provides various chart types like line chart, venn diagram, network and word cloud. Its users are located on medical researchers who do not have programming background. Disease News Discovery Website: http://digbio.missouri.edu/zengs/DiseaseNewsDiscovery/datasource.html

iviz

cBioPortal Study View

knowledgesystems-k8s-deployment

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

matchengine-v2

Open source engine for matching cancer patients to precision medicine clinical trials (V2).

matchminer-api

A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

matchminer-curate

MatchMiner Curation User Interface

matchminer-engine

Match genomic profiles to clinical trials

matchminer-scripts

A collection of scripts which may be useful for deploying or utilizing MatchMiner.

matchminer-ui

oncokb

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

oncokb-public

oncotreenx

light networkx wrapper around the oncotree data structure

trial-viewer

A pure vanilla json viewer for trials