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About Me

Hey there! I'm Kateřina, and I'm a bioinformatician based at the Laboratory of Genomics and Bioinformatics of the Institute of Molecular Genetics 🧬.

💡 Skills & Interests

  • Bioinformatics
  • Genomics
  • Transcriptomics

🚀 Currently learning

  • Long-read transcriptomics
  • Single-Cell Analysis
  • Creating an agent with locally running open-source LLMs
  • Spatial Transcriptomics

👩‍🔬 Day Job

I work at the Sequencing and Bioinformatics Core Facility of the Institute of Molecular Genetics, where I do bioinformatic analysis as a service for other research groups. What I love about my job is that I encouter various biological experiments, I get to use so many different tools for the analysis and I'm learning a lot 🧙‍♀️.

🎓 Teaching

In addition to my research, I teach practicals for the courses Essential Bioinformatics and Statistical Data Analysis at the University of Chemistry and Technology, Prague.

🔬 PhD Pursuits

At the same time, I'm working on my PhD, where I'm developing a tool that would search for hidden genes 💎.

Kateřina Večerková's Projects

clipseq icon clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

gget icon gget

🧬 gget enables efficient querying of genomic reference databases

gtfparse icon gtfparse

Parsing tools for GTF (gene transfer format) files

hidden-genes-msc icon hidden-genes-msc

Diploma thesis: This project provides an automated approach for searching for hidden genes in vertebrate genomes.

hidden-genes-phd icon hidden-genes-phd

Dissertation: Tool to search for missing orthologs in vertebrate genomes

rust-by-practice icon rust-by-practice

Learning Rust By Practice, narrowing the gap between beginner and skilled-dev through challenging examples, exercises and projects.

statistical_data_analysis_in_r icon statistical_data_analysis_in_r

Teaching materials for advanced exercises for the Master's course Statistical Data Analysis at the University of Chemical Technology in Prague

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