Comments (2)
Hi Yuna,
Thanks for identifying this issue. I have amended this so that the correct output is generated for CIRI data.
This issue has reminded me that the BSJ sequence retrieved is obtained from the genome without any cross reference to gene model. The current implementation extends 125nt both directions from the BSJ. In some cases this length will extend beyond the exon boundary. I should properly define/document this so will leave this issue open and update vignette and Ularcirc page accordingly.
Regards,
David
from ularcirc.
ok thank you
from ularcirc.
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from ularcirc.