vcastro Goto Github PK

arch-suicide-prediction

Source code for extracting data from the ARCH network sites and running NBC model prediction

ccs

R package with HCUP Clinical Classification Software (CCS) mapping to common diagnosis and procedure codes

cdc_wonder_sandbox

chatstream

Example Shiny for Python app which talks to the OpenAI API

clearer

repository for clearer

clinicaltext

Facilitate Clinical Text Processing Using the tidytext Approach.

clinspacy

Clinical Natural Language Processing using spaCy, scispacy, and medspacy

commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

cvrisk

R package to calculate cardiovascular risk scores

etl-synthea

Conversion from Synthea CSV to OMOP CDM

gatsby-starter-netlify-cms

i2b2-docker

i2b2 stack on Docker

icd10us

R package to work with ICD-10-CM and ICD-10-PCS codes

manhattan_icd9

ICD9 Manhattan Plot

medication_xmlparser

modeldb

Run models inside a database using R

personalweb

Personal website

phecode

R package containing Phecode descriptions and mappings to ICD9 and ICD10 codes

phenotype_data_acquisition

The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream

phewas

The PheWAS R package

redcapr

R utilities for interacting with REDCap

ri2b2casecontrol

ri2b2matchcontrols

tidypredict

Run predictions inside the database

umls_mssql_load

Load UMLS Metathesaurus Files into a SQL Server Database

vcastro.github.io

Public quarto website

victor

Miscellaneous R functions