Comments (2)
Thanks! In the current release we are not importing "utils" when we import the package. Therefore you should directly use "from cinemaot import utils" and use "utils.assignleiden(de,'celltype','leiden','typebatch')" instead. Let me know if you encounter further problems.
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Just wanted to notify you that the tutorial notebook still seems to have a co.utils call that throws an error. It's right after the Leiden clustering.
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Related Issues (11)
- Question about typebatch HOT 4
- Ref_label and expr_label in notebook tutorial switched
- Do you have a snippet to reproduce the comparisons made on Fig. 3? HOT 1
- Cannot find TR.txt, HLA.txt, IG.txt
- Can't import cinemaot module after pip install from git HOT 1
- Individual treatment effect matrices HOT 4
- install error HOT 1
- A couple of questions! HOT 2
- Is it possible to apply CINEMA-OT to Spatial-seq Data? HOT 1
- R code for labeled volcano plot HOT 1
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