uio-bmi Goto Github PK
Name: Centre for Bioinformatics, University of Oslo
Type: Organization
Bio: The hub of bioinformatics and computational biology at the University of Oslo
Twitter: unioslo_bioinfo
Location: Oslo, Norway
Centre for Bioinformatics, University of Oslo's Projects
bedtools2
A powerful toolset for genome arithmetic.
bmi_python_sample_project
A baseic Python sample project, that can be used to initialize new Python projects
causalairr
compairr
Comparison of Adaptive Immune Receptor Repertoires
compairr-benchmarking
cookiecutter-python-research-project
A cookiecutter for easier continous integration in a research project based on Python code
crypt4gh
Crypt4GH standard implementation
dagsim
A framework and specification language for simulating data based on graphical models
dagsim_usecases
fdr_hacking
galaxy-graph-peak-caller
This is a fork of Galaxy, intended for running Graph Peak Caller.
genome-tools-for-chimerax
Genome Tools for ChimeraX
gpu-minimap
graph-peak-caller-data
Data for running Graph Peak Caller experiments
graph_mapping_benchmarking
Docker container for running graph-mapping benchmarks
graph_minimap
Rough Python prototype Minimap-ish mapper for graph-based references
graph_peak_caller
ChIP-seq peak caller for reads mapped to a graph-based reference genome
graph_peak_caller_paper
Nextflow Graph-based chip seq pipeline, using the graph-based peak caller
graphalign
Needleman-Wunch implementation for graph
hocort
HoCoRT - Remove specific organisms from sequencing reads
hocort-eval
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
immuneml
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
immuneml_supplementary_material
This repository contains supplementary material for creating figures as they appear in the immuneML manuscript (https://www.biorxiv.org/content/10.1101/2021.03.08.433891v3)
immuneml_tools
Galaxy tools using the immuneML conda package.
in-biosx000
Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo
in1000-referanseoppgaver
Oppgaver til referanser i in1000
infra-api
Api for infrastructure server (for github-hooks)
infra-frontend
A frontend in javascript for displaying test and coverage results for Python projects.
ireceptor_datasource_tool
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