uhkniazi Goto Github PK

3d_alignment_viewer

A 3D structure based protein sequence alignment viewer to select important residues

alice_roc_cv_rec_rem

Cross validation and ROC curve analysis for cytokine levels of Recent vs Remote groups

brc_allergy_oliver_pid_18

Characterisation of IgE repretoire measured using ImmunoCAP ISAC microarray

brc_bioinformatics_course

brc_blaschkoidpsoriasis_alex_pid_22

RNA Seq data for Blaschkoid Psoriasis

brc_cirrhosisbiomarker_mcphailm

Biomarker to predict survival outcome at 90 days in patients with cirrhosis.

brc_covid_konstantinos_pid_26

Various analyses of the GSTT and KCH cohorts

brc_crispr_offtargetmutations_alex_pid_17

Characterise the off target mutations in a CRISPR Cas9 system using NGS data

brc_csf_proteomics_jamie_pid_15

DE and Pathway analysis for proteomics data from CSF samples

brc_fog1ko_john_pid_20

RNA-Seq data for Mouse MEL WT and KO cell lines

brc_fog1ko_john_pid_25

Second dataset comparing RNA-seq from 3 MEL FOG-1 K.O clones (D3, G9 & C8) between each other and between WT MEL cells both non-induced and induced states.

brc_humanorganoids_chronis

Epithelial crypt organoids from gut biopsies treated with different cytokines.

brc_ilc_joana_pid_21

RNA-Seq data set from innate lymphoid cells.

brc_imagestream

Image stream data inherited from previous colleagues and their scripts

brc_immerse_manu_pid_27

Analysis of various data sets in the IMMERSE study

brc_immunodeficiency_mi

Genotype Analysis of Primary Immunodeficiency

brc_keloid

Analysis of various Keloid (scarring) data sets

brc_leonie_synovialfibroblasts

Meta analysis of various datasets from different studies

brc_liver_cld_pid_29

SE84954: Expression data from liver, muscle and fat tissue of children with end stage liver disease

brc_neuraltube_miho

Investigating the effect of folic acid on the neural tube defect transcriptome and methylome

brc_nox4_olga_pid_23

Expression profiling of Nox4 mutants

brc_nox4d_anil_pid_24

Cardioprotective role of Nox4D in Myocardial infarction

brc_organoid_joana

Transcriptomic changes in organoid small intestinal epithelial cells upon interaction with lymphocytes

brc_organoids_geraldine

RNA-Seq data from mouse intestinal organoids

brc_organoids_jonathan_pid_14

RNA-Seq data set from human patient biopsy stimulated with various cytokines

brc_organoidshuman_jonathan

Study Colonic biopsy explant organoids treated them with different cytokines

brc_preterm_pid_28

Analysis of various preterm birth datasets

brc_singlecell_ljames

Analysis of Single Cell sequencing data for L James

brc_skingut_microbiome

How do skin and gut microbiota relate to the risk of atopic eczema and food allergy in infancy.

brc_somaticmutations_pid_31

Detection of somatic mutations from deep sequencing