uct-cbio Goto Github PK
Name: UCT CBIO
Type: Organization
Name: UCT CBIO
Type: Organization
dada2 Nextflow pipeline
Decontamination module
This repository contains an older version of our 16S rDNA diversity analysis pipeline. It uses a combination of bash scripts. To get a more updated version of the pipeline using Nextflow please go here: https://github.com/h3abionet/h3abionet16S/tree/master/workflows-nxf
A pipeline for variant calling on bacterial genomes created with Nextflow and singularity / docker
Scripts for maintaining services and setup on the bst.cbio.uct.ac.za server. Also contain some scripts to pull info from the BST Redmine instance.
This repos contain Galaxy tools and setup code of the UCT CBIO Galaxy server. It mainly contained customised tools for EST annotation and mapping of expression data onto pathways. The code was last worked on in 2011.
A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Testing github for hosting releases of in-house software
Strep pneumoniae whole genome sequencing pipeline. The code in this repos was developed by Katie. It was done for a special request from the Medical Microbiology lab. Gerrit just moved it over from the original BitBucket space.
MLST using srst2, implemented in Nextflow
Variant calling and somatic mutation/CNV detection for next-generation sequencing data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.