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abc-flow

autocd

Automated synthetic microbial Community Design

cin_crc

cin_pdo

cin_sv

cneta

Copy Number Evolutionary Tree Analysis

colony-com

Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains

dodl

DODL: digital optimisation of diffusible logic

experimentdb

Simple experimental data management

flopr

An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.

mimic

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions

red

Reinforcment learning for Experimental Design

rocc

ROCC: Reinforcement learning for the Optimisation of Co-Cultures

simulate_cell_growth

spatial-computing

stabilityfinder

Main code area

sv-model

A package that generates and models the evolution of structural variation in cancer genomes through multiple cell cycles, aimed at elucidating the mechanisms behind large scale error events such as chromothripsis.

synbioweaver

ucl-cssb.github.io

wavelength2colour

Convert a numeric wavelength to an RGB or Hex colour

wcm_plasmid_loss

worm_neural_nets