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.github

The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.

2023-12-14-uab

A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.

2024-03-18-uab

2024-07-09-uab

bulk_rna_seq_workshop

Workshop materials for the U-BDS bulk RNA-seq lessons

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

Bioinformatics containers

gbmpdxstr

Source code for the GbmPdxSTR app available at gliomamodels.com

git-novice

Version Control with Git

mulled

Mulled - Automatized Containerized Software Repository

multi-package-containers

Testing building mulled containers for multi-requirement tools.

scnanoseq

Single-cell/nuclei pipeline for data derived from Oxford Nanopore

test-datasets

Test data to be used for automated testing with the nf-core pipelines

training_guides

Compilation of training guides

zebrafish_telencephalon_atlas

A R Shiny app of the transcriptome atlas of the maturing zebrafish telencephalon