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amplicon_cluster

De novo clustering of full-length amplicon sequences

anotheraligner

Another aligner with k-mer seeding, chaining, and dynamic banding DP, mostly for educational purposes

appengine-rss

A simple RSS feed aggregator and reader for Google AppEngine

bntools

Tools for BioNano data analysis

bulk-fast5-browser

c-minhash

Simple and fast MinHash implementation in C with Python wrapper

compatible-intervals

Methods for computing genome-wide four-gamete compatible intervals describing local phylogenetic structure

cthulhu

Taxonomic classification of metagenomes (or anything else)

cwdtw

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

depore

editor

A generic client-side javascript file editor

f-seq

A Feature Density Estimator for High-Throughput Sequence Tags

fastat

flac

Full-length amplicon clustering

flowchart-svg

An extension of svg.js to add flowchart-specific functions

fmlrc

a long-read error correction tool using the multi-string Burrows Wheeler Transform

gel-js

ico-js

Define custom vector-based icons and include with CSS -

js-latex-tutorial

A Javascript-only LaTeX tutorial with editor, compiler, and PDF display.

js-sql-tutorial

A Javascript-based SQL IDE and tutorial

kmc

Fast and frugal disk based k-mer counter

lrc_eval

Long read error correction evaluation scripts

minlookup

Fast memory-efficient pre-alignment of long high-error sequences using locality-sensitive hashing

minnow

A long-read RNA quantifier with as confusing a name as possible

msbwt

A python toolkit for building and querying multi-string BWTs

overlap-aligner

Tools for semi-global/overlap/edge alignment in C

phylogeny-impute

Imputation using local phylogeny

population-ancestry-viewer

A flexible web-based framework for visualization of collinear genomic features

ralf

A long-read sequence aligner in Rust

rekit

A toolkit for processing restriction maps