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amazon-ecs-developer-guide

The open source version of the Amazon ECS developer guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.

arduino

An Arduino project to emulate the whack-a-mole game using vibration sensors, LEDs, sound and poofers.

arduino_lcd_menu

This library creates menu systems primarily useful for 16x2 or 16x4 LCD displays.

aws-cloudformation-templates

A collection of useful CloudFormation templates

aws-genomics-workflows

Genomics Workflows on AWS

cbioportal

cBioPortal for Cancer Genomics

cfn-quiz

cftemplates

AWS CloudFormation Templates

cmonitor

A Docker/LXC, database-free, lightweight container performance monitoring solution, perfect for ephemeral containers (e.g. containers used for DevOps automatic testing). Can also be used with InfluxDB and Grafana.

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cromwell-ubuntu18-devbox

Development env for Cromwell WDL workflows

data-modal

A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.

docker-confd-aws-variable-set

docker-readthedocs

:whale: ReadTheDocs (RTD, read the docs) in docker

dotfiles

Backup of my dotfiles

ehive-base-ubuntu-18-extended

image to extend ehive-base-ubuntu-18

ehive-sentieon-feb-basic

Basic docker file for Sentieon FEB ( only installs required programs )

ensembl-analysis

Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ensembl-hive-slurm

Slurm Meadow for Ensembl Hive

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

ensembl-variation

The Ensembl Variation Perl API and SQL schema

fastled

The main FastLED library (successor to FastSPI_LED). Please direct questions/requests for advice to the g+ community - http://fastled.io/+ - we'd like to keep issues to just tracking bugs/enhancements/tasks. *NOTE* library work is currently on hold - see https://plus.google.com/102282558639672545743/posts/JQKcujjaXXC for details.

guihive

Graphical interface for the eHive workflow manager

igv-webapp

IGV Web App

igv-widgets

UI widgets for igvteam applications

index-tsv-files-with-solr-dih-one-doc-per-line

Description / example how to index a bunch of CSV files with the Solr DataImportHandler and generate one solr document per CSV line

index-xml-files-from-clinicaltrials-gov-with-solr-dih

Quick example how to index the XML files from clinicalTrials.gov with SOLR

inst-info

jhv

private repo for notes and projects