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2019-bss

Introduction to statistics and machine learning for bioinformatics

achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

banking_expenses_report

Generates a small report of the banking expenses by category

bioinf_summer_school

Bioinformatics summer school @UCLouvain la Neuve, Belgium

blcasubtyping

Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA

breastcancerspatialproteomics

deeplearning-biology

A list of deep learning implementations in biology

expedia_ranking_hotels

A hotel recommender system based on a Machine Learning and Data Mining approach

flexgsea-r

Flexible gene set enrichment analysis

gcpworkshop

README to follow along with the GCP workshop from HMF

geomxtools

Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

geomxworkflows

Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages

google_hash_code_qualification_2018

Repository for google hash code competition 2018 (qualification phase). https://hashcode.withgoogle.com/

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

lintr

Static Code Analysis for R

mgc-biosb-singlecellanalysis2020

minimal-fork.github.io

Minimal is a Jekyll theme for GitHub Pages

mofa_training

MOFA training resources

nabucco_spatial_manuscript

Code to reproduce the findings from the 'Spatial analysis paper NABUCCO'

nanostringnctools

Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.

nextflow-workshop

Nextflow workshop materials 27 May 2021

parsetcgaclinicalxml

a small python program for parsing TCGA clinical XMLs to CSV format

snp_continental_predictor

Machine Learning predictor of the continental origin using SNP data

spatstat.core

sub-package of spatstat containing core functionality for data analysis and modelling

statistics_with_r

VU course 2017

strelka

Strelka2 germline and somatic small variant caller

tandem

:exclamation: This is a read-only mirror of the CRAN R package repository. TANDEM — A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types

tropicalberto

Config files for my GitHub profile.

tropicalberto.github.io

tsescore_icis

Calculate the TSE score to predict response to ICIs