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.github

Community health files for the @GitHub organization

aimeos-typo3

TYPO3 e-commerce extension for high performance web shops

bioconda-recipes

Conda recipes for the bioconda channel.

chronologer

Retention time prediction

compass

Coon OMSSA (Open Mass Spectrometry Search Algorithm) Proteomic Analysis Software Suite.

dbscan

DBSCAN Clustering Algorithm C# Implementation

dbscan-1

Implementation of the DBSCAN clustering algorithm

dechargerrepo

decontools

Used to de-isotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

docs

This repository contains .NET Documentation.

falcon

Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

flashlfq

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

fuleta

FUll-LEngth Transcriptome Analysis

gptmd

Use open search results (from Morpheus) to create a database with uncovered candidate PTM annotations

ipec

Correcting the sequencing errors in long reads (PacBio) using high quality short reads (Illumina)

lncrnadiscovery

Snakemake pipeline for lncRNA discovery and quantification

long-read-proteogenomics

machinelearning

ML.NET is an open source and cross-platform machine learning framework for .NET.

machinelearning-samples

Samples for ML.NET, an open source and cross-platform machine learning framework for .NET.

metamorpheus

Bottom-up proteomics database search software with integrated posttranslational modification (PTM) discovery capability

metamorpheus-feedstock

A conda-smithy repository for metamorpheus.

metanetwork

Weighted Gene Co-expression Network Analysis Rshiny Application

metapal

A framework for reading and writing ML-ready proteomics data

mofa

Multi-Omics Factor Analysis

ms1_datasimulator

mupexi

MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.

mzdeconvolution

mzlib

Library for mass spectrometry projects

peptide-shaker

Interpretation of proteomics identification results

philosopher

A complete toolkit for shotgun proteomics data analysis