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ancom

Code and documentation for ANCOM

brailler

An add-on package for R primarily aimed at improving access to R for blind users. The package contains tools and functions that will help get a student through their first year statistics course, and probably well beyond it.

busmap

Bayesian genotyping Uncertainty with Sequencing data and linkage MAPping

codaseq

Functions for compositional analysis of high throughput sequencing

gbs_sim_code

PhD simulaiton code

ggseqlogo

Publication-quality sequence logos in R

grm_autoploidy_hts_data

Code for performing the simulations in the paper "Construction of relatedness matrices in autopolyploid populations using low depth high-throughput sequencing data"

gusbase

Genotyping Uncertainty with Sequencing data - Base package

gusmap

Genotyping Uncertainty with Sequencing data and linkage MAPping

gusrelate

Genotyping Uncertainty with Sequencing data and RELATEdness

kgd

Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

roxygen

testrcpp

R package for testing how to combine C and C++ code into the same package

updog

Flexible Genotyping of Polyploids using Next Generation Sequencing Data

writer

An application for editing R markdown documents that is accessible for blind people using screen reading software.