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3d-dna

3D de novo assembly (3D DNA) pipeline

agora

Algorithm For Gene Order Reconstruction in Ancestors

alphafold-peptide-receptors

Identifying peptide-receptor interactions using AlphaFold-Multimer

alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

alphapulldown

ampseq-ssr

An accurate and efficient method for large-scale SSR genotyping and applications

apear

Enrichment Networks for Pathway Enrichment Analysis

autoprimer1.0

clinician-friendly exonic primer design

bengal

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

boldsystem

bpb3

BayesPI-BAR 3

camp

predicting peptide-protein interactions

ccbr_tobias

Tobias implementation for ATAC seq data.

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

centromere_seeker

bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)

centromics

Centromics: visualing centromeres with multiple omics data

chiimp-ssr-genotype

Computational, High-throughput Individual Identification through Microsatellite Profiling

chromap

Fast alignment and preprocessing of chromatin profiles

classicalbooks

combisv

Combine structural variation outputs from long sequencing reads into a superior call set

command-line-rust

Code for Command-Line Rust (O'Reilly, 2022, ISBN 9781098109417) https://learning.oreilly.com/library/view/command-line-rust/9781098109424/

compleasm

A genome completeness evaluation tool based on miniprot

craq

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

danio-code_data_analysis

decoupler

R package to infer biological activities from omics data using a collection of methods.

deeplearning_ai_books

deeplearning.ai（吴恩达老师的深度学习课程笔记及资源）

deschrambler

dl_binder_design

edta

Extensive de-novo TE Annotator