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tomdcsmith's Projects
biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
cs224n-web
http://cs224n.stanford.edu
cs224n-winter17-notes
Course notes for CS224N Winter17
cs231n.github.io
Public facing notes page
data-science-your-way
Ways of doing Data Science Engineering and Machine Learning in R and Python
deeplearning-papernotes
Summaries and notes on Deep Learning research papers
eva-cttv-pipeline
Python package which queries CellBase REST web services to generate CTTV evidence strings
eva-tools
Tools compatible with the infrastructure of the European Variation Archive pipeline
eva-ws
European Variation Archive REST web services API
fastahack
utilities for indexing and sequence extraction from FASTA files
luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
machinelearningbootcamp
boilerplate code, scripts, modules, data for CCA 2-day Machine Learning Bootcamp
mlclass
Python code for Machine Learning course from Coursera
models
Models built with TensorFlow
mongo-java-driver
The Java driver for MongoDB
natural-language-process
CS224d: Deep Learning for Natural Language Processing
oxford-cs-deepnlp-2017-lectures
Oxford Deep NLP 2017 course
oxford-cs-deepnlp-2017-practical-1
Oxford Deep NLP 2017 course - Practical 1: word2vec
oxford-cs-deepnlp-2017-practical-2
Oxford Deep NLP 2017 course - Practical 2: Text Classification
oxford-cs-deepnlp-2017-practical-3
Oxford Deep NLP 2017 course - Practical 3: Text Classification with RNNs
oxford-cs-deepnlp-2017-practical-open
Oxford Deep NLP 2017 course - Open practical
pyvcf
A Variant Call Format reader for Python.
so-ontologies
Collect of Ontologies
spark-py-notebooks
Apache Spark & Python (pySpark) tutorials for Big Data Analysis and Machine Learning as IPython / Jupyter notebooks
spark-r-notebooks
R on Apache Spark (SparkR) tutorials for Big Data analysis and Machine Learning as IPython / Jupyter notebooks
tf-stanford-tutorials
This repository contains code examples for the course CS 20SI: TensorFlow for Deep Learning Research.
usbkill
usbkill waits for a change on your USB ports, then immediately kills your computer. Anti forensic, USB -> kill
variation-commons
Library of core components to be used from multiple EBI Variation projects
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
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