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adam-fx

An ADAM extension library for loading .vcf files annotated with SnpEff and SnpSift.

alois

ML-based exploration and analysis of AD-ST

anchor-baggage

Experimentation code for the article "Building Topic Models Based on Anchor Words" based on the paper "Learning Topic Models: Going beyond SVD" by Sanjeev Arora, Rong Ge, and Ankur Moitra.

anchor-java

Mallet-compatible anchor-based topic model

anchor-py

See: http://people.csail.mit.edu/moitra/software.html

arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

boruta_py

Python implementations of the Boruta all-relevant feature selection method.

brassica

csnmf

dask-ml

Scalable Machine Learn with Dask

declarativewidgets

Jupyter Declarative Widget Extension

dinky

Dinky is a Jekyll theme for GitHub Pages

docker-scripts

Docker scripts for a Big Data Genomics technology stack

docker-zeppelin

Docker build for Zeppelin, a web-based Spark notebook

dominator

Virtual-Dom in ClojureScript

duct-ale

A Duct CLJ(S) exercise project.

fluge

Cljs/Quil data visualization study

fs-scala

Apache Spark Implementation of Fixed Size Least Squares Support Vector Machines

fulcro-ci

A docker image based on Clojure with required dependencies to perform CI/CD builds for Fulcro apps.

fulcro-developer-guide

Fulcro 3 Developer's Guide. (See root of older fulcro repository for version 2)

fun_py

A short course on functional programming in Python using light-weight tools.

genie3-study

An attempt at implementing a scala+Spark version of Genie3

genie3_benchmarks

hip-flask

a small Flask tryout app

hundur

A minimal Python library for gene regulatory network inference.

ide-settings

Some setting for IntelliJ, Cursive, other tools.

invaderz

ClojureScript + Quil study inspired by http://www.christiangross.info/32767-invaders-14-poster/

karna

kernel embedding study

kernel-matrix

A study project for kernel matrix computation with Apache Spark

kierros

a cljs library inspired by cycle.js