tmaklin Goto Github PK
Name: Tommi Mäklin
Type: User
Bio: Computer scientist / statistician working with metagenomic sequencing data @ University of Helsinki.
Location: Helsinki, Finland
Blog: https://maklin.fi
Name: Tommi Mäklin
Type: User
Bio: Computer scientist / statistician working with metagenomic sequencing data @ University of Helsinki.
Location: Helsinki, Finland
Blog: https://maklin.fi
Assembled Genomes Compressor
(wip) Read samples from agc archives using C++ iostreams.
Compact Themisto pseudoalignment files using BitMagic.
Get assembly statistics from FASTA and FASTQ files
Code for group website
Example of using BIB to identify Staphylococcus aureus strains
Scripts for building distributable binaries of various bioinformatics software.
Conda recipes for the bioconda channel.
A collection of miscellaneous bioinformatics scripts.
BitSeq code
A C++ header-only ZLib / libBZ2 / libLZMA / Zstandard wrapper.
Screen assemblies for colibactin production and resistance genes.
Partial reimplementation of demix_check by @harry-thorpe without the python or R dependencies.
Reimplementation of the variable selection via RATE method https://github.com/lorinanthony/RATE
Header-only command-line parsing library for C++11.
Error-checking wrapper for working with files and directories in c++.
Rapid and scalable correlation estimation for compositional data
A fast and compact k-mer index for large-scale matching and color queries.
Compacted and colored de Bruijn graph construction and querying
Python package for detection of chimerism and contamination in prokaryotic genomes.
Firmware for Pinetime smartwatch written in C++ and based on FreeRTOS
Bacterial strain identification from sequencing data
Near-optimal RNA-Seq quantification
A fork of KMC used in the SBWT repository https://github.com/algbio/SBWT
Sources for my personal webpage https://maklin.fi Created using hugo.
Fast genome and metagenome distance estimation using MinHash
Pangenome-aware dereplication of bacterial genomes into ANI clusters.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.