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Haoran, Li's Projects

cdna_cupcake icon cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

chiron icon chiron

A basecaller for Oxford Nanopore Technologies' sequencers

combat.py icon combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

epinano icon epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

isoseqsim icon isoseqsim

Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies

panoptes icon panoptes

Monitor computational workflows in real time

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