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bkcharts

Optional High Level charts API built on top of Bokeh

bokeh

Interactive Web Plotting for Python

cookhla

covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

cvauc

Computationally efficient confidence intervals for cross-validated AUC estimates in R

dashboards-frameworks-comparison

expecto

gwas_scripts

Codebook from my GWAS cookbook

lambda

A python script to compute genomic inflation factor

maftools

:cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

manhattanly

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

phosphorus-public

renrenbackup

A backup tool for renren.com

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

seasonal-flu

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

strand_fix

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

watershed

Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq