Comments (1)
Under the tmp folder, sub-folders are created by software (ie. bwa/stampy/vcftools...etc) instead of file types
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Related Issues (20)
- process reads and mapping results
- flexible about reads layout HOT 1
- samples table HOT 1
- id-dependent methods fail in case of duplicated ids in gbk
- freebayes with multiple samples HOT 1
- create submodules
- synonymous mutation detection
- dryrun
- user options HOT 1
- functions about file validation
- rules about phenotype table
- DESeq2 input HOT 1
- Division and collaboration HOT 2
- loading the main environment HOT 1
- create genml HOT 1
- Windows style newline characters in the old scripts
- version control of prokka
- reads compression
- Genyml file generator
- install Roary dependencies
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