stampy about seq2geno

[thkuo]

Stampy cannot be installed via conda and requires registration. Can it be directly packaged and redistributed?
The README file:

12. License
    ===========

This is a release version. Permission is granted for the normal
use of the program and its output in an academic setting, including
in publications. If the program is used to generate data for a
publication, please cite this paper:

G. Lunter and M. Goodson. Stampy: A statistical algorithm for
sensitive and fast mapping of Illumina sequence reads. Genome
Res. 2011 21:936-939.

The program itself may not be modified in any way, and may not be
reverse-engineered.

This license does not allow the use of this program for any
commercial purpose. If you wish to use this program for commercial
purposes, please contact the author.

No guarantees are given as to the program's correctness, or the
accuracy or completeness of its output. The author accepts no
liability for damage or otherwise following from using and
interpreting the output of this program. The software is supplied
"as is", without obligation by the author to provide any services
or support.

[thkuo]

The option of multi-threading (-t) causes the change of mapping result.
1. remove the option as reproducing the old results
2. showing the importance of salmon
3. Where to report it?