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16s-metatranscriptomic-analysis

NextFlow Pipelines for Qiime2 & Kraken2 metagenomic|metatranscriptomic analyses

ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

baclife

biobakeryutils.jl

A companion package for Microbiome.jl for working with the Biobakery family of computational tools

biu

BIoinformatics Utilities

cat_pack

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

cocpyth

Command line interface to generate Call of Cthulhu characters

dnd-character

library for making Dungeons & Dragons 5e characters as serializable data

etn

Electronic Traineeship Notebook for BIT @ HOME

gtdbtk-docker-cli

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

kraken2

The second version of the Kraken taxonomic sequence classification system

mag

Assembly and binning of metagenomes

miniature_pallete

Extracting miniature painting colors from an image

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multidiffabundance

A toolkit for the testing of differential abundance with many different tools

phlogiston

Python package to work with fictional star chart data.

scarap

A toolkit for prokaryotic comparative genomics

scikit-optimize

Sequential model-based optimization with a `scipy.optimize` interface

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data

test-datasets

Test data to be used for automated testing with the nf-core pipelines

theoafidian.github.io

My page about brewing recipes