Jan Zimmermann's Projects
a Python package for unbiased estimation of timescales and hypothesis testing
Workflow for collecting human keypoint annotations using Amazon SageMaker
Simulation and Data for the Average Sliding Window Correlation method. doi: 10.1002/hbm.24509
Distributed behavioral experiments
beast-tracker
CAPE using text-graphs
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
functions for for converting data from DeepLabCut formatting to DLTdv tools or Argus format
EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
Group ICA/IVA software (MATLAB)
Image processing software on GPU (Windows, Linux, ARM) for real time machine vision camera applications. Performance benchmarks and Glass-to-Glass time measurements. MIPI CSI cameras support. RAW2RGB processing on CUDA with 16-bit ISP. Software for Jetson.
Software for electrophysiology data acquisition
Impedance (spectrum) analyzer for microelectrodes based on AD5933
AcquisitionTool to record multi-camera recordings for the JARVIS 3D Markerless Pose Estimation Toolbox
Fast spike sorting with drift correction for up to a thousand channels
Stable version of MonkeyLogic
Released resources for NGNIv1 online real-time spike sorting platform
NIMH Macaque Template
A props file to setup properties for addons as projects (Visual Studio)
Lambda driven events system for openFrameworks for functional programming possibilities
Interfaces and helpers for working with machine vision cameras
Write plugins in openFrameworks which you can load into your openFrameworks application at run time
Singleton pattern for classes (doesn't need to be with openFrameworks, but we're laying it out like it is)
openframeworks addon for interfacing with FLIR (ne Point Grey) cameras
Automatically exported from code.google.com/p/ofxvideograbberptgrey
python tools for working with open-ephys data in the .kwik format
openFrameworks is a community-developed cross platform toolkit for creative coding in C++.
MR Guided Planning Software
python code for RAICAR and BICAR