Implement MCP methods about pertpy

[Zethson]

TODO list

• Implement DIALOGUE 2
• Add DIALOGUE 3
• Separate load and calculate_multifactor_PMD calculation -> have two separate function calls for these; load should store stuff in the AnnData object already
• Rename the MCPs to something better and not just 0, 1, ...
• Rewrite the MCP concatenation to ensure that we're not returning an AnnData object but modifying inplace
• Write tests for the functions
• Solve TODOs
• Add plotting functions from DIALOGUE R
• Think about factoring all DIALOGUE 1, DIALOGUE 2 and DIALOGUE 3 steps into their own Python files aka create a private _dialogue module
• remove new_mcp_scores from multilevel_modeling and expose calculate_cca_sig
• ensure calculate_cca_sig and multilevel_modeling can be called separately
• Store the most used parameters in the DIALOGUE object -> e.g. sample etc
• hierarchical modeling only returns results for 1 cell type -> why?!? Is the result being overwritten?
• results from hierarchical modeling should not return sig_genes per cell type pair but rather per cell type
• make sure user is aware that n_UMI needs to be logged if .X is logged
• multilevel_modeling does not allow for confounder to be None -> code breaks (ignore type hints)