Related Issues (20)
- multilevel_modeling fails if given an AnnData with .X type ndarray: HOT 1
- multilevel_modeling fails if given an n_counts_key with spaces HOT 2
- multilevel_modeling fails when confounder set to None
- Color option in da_beeswarm HOT 1
- Implement perturbation space HOT 1
- Support Pandas 2.0
- Use Literals for MetaData options
- Move getinfo functions into their own module for MetaData
- "Unknown environment 'tabular'" error in some tutorials HOT 2
- Reconsider CelllineMetadata naming
- LLVM ERROR: can not load pertpy with rpy2 environment HOT 3
- gpu not detectable HOT 4
- Try to speed up cell line tests through caching
- Running the scCODA model inference (pt.tl.Sccoda.run_nuts()) gives AssertionError: size of plate should be positive HOT 8
- scCODA vs Pertpy HOT 1
- 'pertpy.tools' has no attribute 'Sccoda' HOT 2
- Attribute Error: module "pertpy" has no attribute 'data' HOT 10
- Attribute scperturb a bit better
- pertpy_scCODA for scATAC-dataset? HOT 2
- Readd DIALOGUE with proper attribution
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