tengfei-emory Goto Github PK

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

aod

:exclamation: This is a read-only mirror of the CRAN R package repository. aod — Analysis of Overdispersed Data. Homepage: https://cran.r-project.org/package=aod

bioinflatexstyles

Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals

citrus

coda4microbiome

:exclamation: This is a read-only mirror of the CRAN R package repository. coda4microbiome — Compositional Data Analysis for Microbiome Studies. Homepage: https://malucalle.github.io/coda4microbiome/ Report bugs for this package: https://github.com/malucalle/coda4microbiome/issues

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

enar2021

glmnet

:exclamation: This is a read-only mirror of the CRAN R package repository. glmnet — Lasso and Elastic-Net Regularized Generalized Linear Models. Homepage: https://glmnet.stanford.edu, https://dx.doi.org/10.18637/jss.v033.i01, https://dx.doi.org/10.18637/jss.v039.i05

image

Image for markdown files

jsm2018_shortcoursematerials

Tutorials and code for JSM 2018 short course on statistical methods for single-cell RNA-seq analysis

lcphr

Latent Class Proportional Hazards Regression with Heterogeneous Survival Data

mgc-r

R package for MGC code

microclass

R package for microbial taxonomic classification

mnn2017

Code for the MNN manuscript figures

quantnorm

Mitigating the adverse impact of batch effects in sample pattern detection

riskregression

R package for risk regression and prediction with censored data

scbatch

Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment

scbatch-paper-scripts

Scripts used to generate Figs. 2-5 in scBatch manuscript

scbatch-rcpp

sltca

SLTCA: Scalable and Robust Latent Trajectory Class Analysis Using Artificial Likelihood

tidycmprsk

timereglc

A Time-Dependent Structural Model Between Latent Classes and Competing Risks Outcomes

vgam

:exclamation: This is a read-only mirror of the CRAN R package repository. VGAM — Vector Generalized Linear and Additive Models. Homepage: https://www.stat.auckland.ac.nz/~yee/VGAM

wgeesel

:exclamation: This is a read-only mirror of the CRAN R package repository. wgeesel — Weighted Generalized Estimating Equations and Model Selection