Comments (3)
cx994
commented on June 29, 2024
@yfzon @TencentAILabHealthcare
from scbert.
wmh1203
commented on June 29, 2024
您好，我想用您的模型进行细胞类型的注释，但是我的gpu资源有限，重新用您提供的checkpoint进行finetune需要一个多礼拜的时间，请问可以提供利用Zheng68k进行finetune之后的模型参数吗
Hi 请问您跑出来结果了吗😮💨，我最近也打算用这个模型，如果您有跑好的checkpoint可以分享一下吗～谢谢
from scbert.
TencentAILabHealthcare
commented on June 29, 2024
Zheng68K只是一个样例数据集，展示如何基于某个数据集finetune模型。Zheng68K可能与您所需要进行注释的单细胞数据的细胞类型有所不同，为了取得最优的效果，建议使用您自己的数据集，处理为样例输入，进行finetune。
from scbert.
Related Issues (20)
- #What does this mean when I used my own data for fine-tuning: 'RuntimeError: mat1 dim 1 must match mat2 dim 0' HOT 1
- Code to annotate and plot cells? HOT 2
- ModuleNotFoundError: No module named 'local_attention' HOT 2
- where is 'label' and 'label_dict' files？？？？ HOT 2
- How to get the cell embedding for UMAP? HOT 1
- How to train a new model? HOT 2
- About the pre-trained model weight accessment HOT 1
- Has anyone been able to reproduce the finetune from the paper? HOT 1
- scBERT on Mouse data HOT 1
- How toTrain from scratch HOT 1
- 请问可以分享Human Cell Atlas的数据文件吗 HOT 2
- Checkpoint link is not possible to use HOT 1
- Request for Access to Gene embedding: gene2vec_16906.npy HOT 1
- how to get the gene scequence or name of gen2vec_16906.npy?
- ModuleNotFoundError: No module named 'fast_transformers' HOT 1
- finetune_best.pth加载失败 HOT 1
- 跑出来的结果不太优秀 HOT 9
- 我想跑panglao_10000的数据集，但是有报错。
- finetune.py: proble with local_rank HOT 1
- finetune model parameter
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scbert.