Comments (1)
Thank you for your interest in applying scBERT. I think it is feasible and plausible to extend this methodology to 10x spatial data with the use of spots. Furthermore, the performance may be improved by adding the spatial information (i.e., distance) of spots by modifying the model.
Best,
Fan Yang
from scbert.
Related Issues (20)
- ModuleNotFoundError: No module named 'local_attention' HOT 2
- where is 'label' and 'label_dict' files???? HOT 2
- How to get the cell embedding for UMAP? HOT 1
- How to train a new model? HOT 2
- About the pre-trained model weight accessment HOT 1
- Has anyone been able to reproduce the finetune from the paper? HOT 1
- scBERT on Mouse data HOT 1
- How toTrain from scratch HOT 1
- 请问可以分享Human Cell Atlas的数据文件吗 HOT 2
- Checkpoint link is not possible to use HOT 1
- Request for Access to Gene embedding: gene2vec_16906.npy HOT 1
- how to get the gene scequence or name of gen2vec_16906.npy?
- ModuleNotFoundError: No module named 'fast_transformers' HOT 1
- finetune_best.pth加载失败 HOT 1
- 跑出来的结果不太优秀 HOT 9
- 我想跑panglao_10000的数据集,但是有报错。
- finetune.py: proble with local_rank HOT 1
- finetune model parameter
- Question about the SCDataset class
- 关于attn_sum_save.py使用的问题
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scbert.