Comments (1)
Fixed by 608d758
from filtar.
Related Issues (20)
- Reduce inefficiency in use of whole-genome alignments
- Improve cluster support/integration
- Manage targetscan dependencies within a single conda environment
- Version tracking of dependencies
- Make use of snakemake resource usage profiles
- Linting and formatting
- Allow the user to set library type if this information is known in advance
- Switch away from using three letter species initials
- Process genomic data not split into sequencing block (i.e. contig level assemblies)
- Switch to using toplevel genomes only
- Add a line at the top of each script stating its function
- Implement a more sophisticated method of mapping chromosome/scaffold identifiers
- Generate a report regarding the extent of 3'UTR reannotation
- Add rule to validate generated bedgraph files
- Speed up the process of generating average bedgraph coverage values from many bedgraph files
- Add gene symbol metadata when executing APAtrap
- Standardise and minimise name space throughout the repository
- Eliminate use of shell scripts
- Where appropriate denote rule input/output dependency relationships explicitly
- FilTar error message HOT 1
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from filtar.