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bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

fastai

The fastai deep learning library

fastai-v3

Starter app for fastai v3 model deployment on Render

fastai2

Temporary home for fastai v2 while it's being developed

fastai2_pannuke

geneprofiler

OMOP-CDM Extension for genomic data

hia

Histopathology Image Analysis

htslib

C library for high-throughput sequencing data formats

json

json

migrating_pytorch_to_fastai2

Project to migrate Campanella et al PyTorch work to fastai2

multicovid

This repository contains the notebooks needed to replicate the paper:

pneumonia_render

porpoise

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

practical_machine_learning_jh_project

Project of the coursera course entitled Practice Machine Learning

publications

relecov-tools

set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

relecov_biohackaton

rf_gastro

ts

Torrent Suite

varhc

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples